Articles (43): |
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Habeck M  (2012) Bayesian estimation of free energies from equilibrium simulations
Physical Review Letters 109(10) 5 pages.
 
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Paramasivam N , Habeck M and Linke D (2012) Is the C-terminal insertional signal in Gram-negative bacterial outer membrane proteins species-specific or not
BMC Genomics 13(1).
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Kalev I , Mechelke M , Kopec K , Holder T , Carstens S and Habeck M (2012) CSB: A Python framework for computational structural biology
Bioinformatics .
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Honndorf VS , Coudevylle N , Laufer S , Becker S , Griesinger C and Habeck M (2012) Inferential NMR/X-ray-Based Structure Determination of a
Dibenzo[a,d]cycloheptenone Inhibitor–p38a MAP Kinase Complex
in Solution
Angewandte Chemie 51(10) 2359-2362.
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Paulmann M , Arnold T , Linke D , Özdirekcan S , Kopp A , Gutsmann T , Kalbacher H , Wanke I , Schuenemann V , Habeck M , Buerck J , Ulrich AS and Schittek B (2012) Structure-activity analysis of the dermi-cidin-derived peptide DCD-1L, an anionic antimicrobial peptide present in human sweat
Journal of Biological Chemistry 287(11) 8434-8443.
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Shahid S , Bardiaux B , Franks T , Krabben L , Habeck M , Rossum B and Linke D (2012) Membrane protein structure by solid-state NMR: insights into the autotransport mechanism of YadA
Nature Methods . accepted
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Mechelke M and Habeck M (2012) A probabilistic model for secondary structure prediction from protein chemical shifts
Proteins . submitted
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Habeck M (2012) Bayesian flexible fitting of biomolecular structures into EM maps
Biophysical journal . submitted
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Mechelke M and Habeck M (2012) Calibration of Boltzmann distribution priors in Bayesian data analysis
Physical Review E . submitted
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Kalev I and Habeck M (2011) HHfrag: HMM-based fragment detection using HHpred
Bioinformatics 27(22) 3110-3116.
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Hirsch M , Schölkopf B and Habeck M (2011) A Blind Deconvolution Approach for Improving the Resolution of Cryo-EM Density Maps
Journal of Computational Biology 18(3) 335-346.
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Habeck M and Nilges M (2011) Combining computational modeling with sparse and low-resolution data
Journal of Structural Biology 173(3) 419.
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Habeck M (2011) Statistical mechanics analysis of sparse data
Journal of Structural Biology 173(3) 541-548.
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Armache J-P , Jarasch A , Anger AM , Villa E , Becker T , Bhushan S , Jossinet F , Habeck M , Dindar G , Franckenberg S , Marquez V , Mielke T , Thomm M , Berninghausen O , Beatrix B , Söding J , Westhof E , Wilson DN and Beckmann R (2010) Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-Å resolution
Proceedings of the National Academy of Sciences of the United States of America 107(46) 19748-19753.
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Armache J-P , Jarasch A , Anger AM , Villa E , Becker T , Bhushan S , Jossinet F , Habeck M , Dindar G , Franckenberg S , Marquez V , Mielke T , Thomm M , Berninghausen O , Beatrix B , Söding J , Westhof E , Wilson DN and Beckmann R (2010) Localization of eukaryote-specific ribosomal proteins in a 5.5-Å cryo-EM map of the 80S eukaryotic ribosome
Proceedings of the National Academy of Sciences of the United States of America 107(46) 19754-19759.
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Mechelke M and Habeck M (2010) Robust probabilistic superposition and comparison of protein structures
BMC Bioinformatics 11(363) 1-13.
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Habeck M (2009) Generation of three-dimensional random rotations in fitting and matching problems
Computational Statistics 24(4) 719-731.
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Djuranovic S , Hartmann MD , Habeck M , Ursinus A , Zwickl P , Martin J , Lupas AN and Zeth K (2009) Structure and Activity of the N-Terminal Substrate Recognition Domains in Proteasomal ATPases
Molecular Cell 34(5) 580-590.
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Bardiaux B , Bernard A , Rieping W , Habeck M , Malliavin TE and Nilges M (2009) Influence of Different Assignment Conditions on the Determination of Symmetric Homo-dimeric Structures with ARIA
Proteins 75(3) 569-585.
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Alva VS , Dunin-Horkawicz S , Habeck M , Coles M and Lupas AN (2009) The GD box: A widespread non-contiguous supersecondary structural element
Protein Science 18(9) 1961–1966.
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Hirsch M and Habeck M (2008) Mixture Models for Protein Structure Ensembles
Bioinformatics 24(19) 2184-2192.
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Bayrhuber M , Meins T , Habeck M , Becker S , Giller K , Villinger S , Vonrhein C , Griesinger C , Zweckstetter M and Zeth K (2008) Structure of the human voltage-dependent anion channel
Proceedings of the National Academy of Sciences of the United States of America 105(40) 15370-15375.
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Nilges M , Bernard A , Bardiaux B , Malliavin T , Habeck M and Rieping W (2008) Accurate NMR Structures Through Minimization of an Extended Hybrid Energy
Structure 16(9) 1305-1312.
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Bardiaux B , Bernard A , Rieping W , Habeck M , Malliavin T and Nilges M (2008) Graphical Analysis of NMR Structural Quality and Interactive Contact Map of NOE Assignments in ARIA
BMC Structural Biology 8(30) 1-5.
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Habeck M , Nilges M and Rieping W (2008) A Unifying Probabilistic Framework for Analyzing Residual Dipolar Couplings
Journal of Biomolecular NMR 40(2) 135-144.
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Wolff N , Izadi-Pruneyre N , Scholes J , Habeck M , Linge J , Rieping W , Wandersman C , Nilges M , Delepierre M and Lecroisey A (2008) Comparative Analysis of Structural and Dynamic Properties of the Loaded and Unloaded Hemophore HasA: Functional Implications
Journal of Molecular Biology 376(2) 517-525.
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Rieping W , Nilges M and Habeck M (2008) ISD: A Software Package for Bayesian NMR Structure Calculation
Bioinformatics 24(8) 1104-1105.
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Nilges M , Habeck M and Rieping W (2008) Probabilistic Structure Calculation
Comptes Rendus Chimie 11(4-5) 356-369.
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Habeck M (2007) Bayesian Reconstruction of the Density of States
Physical Review Letters 98(20, 200601) 1-4.
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Rieping W , Habeck M , Bardiaux B , Bernard A , Malliavin TE and Nilges M (2007) ARIA2: automated NOE assignment and data integration in NMR structure calculation
Bioinformatics 23(3) 381-382.
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Nicastro G , Habeck M , Masino L , Svergun DI and Pastore A (2006) Structure validation of the Josephin domain of ataxin-3: Conclusive evidence for an open conformation
Journal of Biomolecular NMR 36(4) 267-277.
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AB E , Atkinson A , Banci L , Bertini I , Ciofi-Baffoni S , Brunner K , Diercks T , Dotsch V , Engelke F , Folkers GE , Griesinger C , Gronwald W , Gunther U , Habeck M , de Jong RN , Kalbitzer HR , Kieffer B , Leeflang BR , Loss S , Luchinat C and Marquardsen T (2006) NMR in the SPINE Structural Proteomics project
Acta Crystallographica D: Biological Crystallography 62(10) 1150-1161.
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Nilges M , Habeck M , Zdravković Si and Rieping W (2006) Error distribution derived NOE distance restraints
Proteins 64(3) 652-664.
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Habeck M , Rieping W and Nilges M (2006) Weighting of experimental evidence in macromolecular structure determination
Proceedings of the National Academy of Sciences of the United States of America 103(6) 1756-1761.
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Rieping W , Habeck M and Nilges M (2005) Modeling Errors in NOE Data with a Log-normal Distribution Improves the Quality of NMR Structures
J. Am. Chem. Soc. 127 16026-16027.
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Habeck M , Rieping W and Nilges M (2005) Bayesian estimation of Karplus parameters and torsion angles from three-bond scalar couplings constants
Journal of Magnetic Resonance 177(1) 160-165.
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Habeck M , Nilges M and Rieping W (2005) Bayesian inference applied to macromolecular structure determination
Physical Review E 72(3,1) 031912-031912.
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Rieping W , Habeck M and Nilges M (2005) Inferential structure determination.
Science 309 303.
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Habeck M , Nilges M and Rieping W (2005) Replica-exchange Monte Carlo scheme for bayesian data analysis.
Phys Rev Lett. 94 018105-018105.
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Linge JP , Habeck M , Rieping W and Nilges M (2004) Correction of spin diffusion during iterative automated NOE assignment.
J Magn Reson. 167 334.
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Linge JP , Habeck M , Rieping W and Nilges M (2004) ARIA: automated NOE assignment and NMR structure calculation.
Bioinformatics 19 315.
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Fogh R , Ionides J , Ulrich E , Boucher W , Vranken W , Linge JP , Habeck M , Rieping W , Bhat TN , Westbrook J , Hendrik K , Gilliland G , Berman H , Thornton J , Nilges M , Markley J and Laue E (2002) The CCPN project: an interim report on a data model for the NMR community.
Nat Struct Biol. 9 416.
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Muhle-Goll C , Habeck M , Carzola O , Nilges M , Labeit S and Granzier H (2001) Structural and functional studies of titin‘s fn3 modules reveal conserved surface patterns and binding to myosin S1--a possible role in the Frank-Starling mechanism of the heart.
J Mol Biol. 313 431.
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Conference papers (9): |
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Hirsch M , Hofmann M , Mantlik F , Pichler BJ , Schölkopf B and Habeck M (2012) A Blind Deconvolution Approach for Pseudo CT Prediction from MR Image Pairs
19th IEEE International Conference on Image Processing (ICIP 2012), IEEE, 2953 -2956.
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Habeck M (2012) Evaluation of marginal likelihoods via the density of states
In: Proceedings of the Fifteenth International Conference on Artificial Intelligence and Statistics (AISTATS 2012), (Ed) N Lawrence and M Girolami, AISTATS 2012, JMLR: W&CP 22, 22, 486--494.
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Joubert P , Nickell S , Beck F , Habeck M , Hirsch M and Schölkopf B (2011) Automatic particle picking using diffusion filtering and random forest classification
International Workshop on Microscopic Image Analysis with Application in Biology (MIAAB 2011), 6 pages.
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Langovoy M , Habeck M and Schölkopf B (2011) Adaptive nonparametric detection in cryo-electron microscopy
58th World Statistics Congress of the International Statistical Institute (ISI 2011), 6 pages.
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Langovoy M , Habeck M and Schölkopf B (2011) Spatial statistics, image analysis and percolation theory
2011 Joint Statistical Meetings (JSM), American Statistical Association, Alexandria, VA, USA, 11 pages.
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Hirsch M , Schölkopf B and Habeck M (2010) A New Algorithm for Improving the Resolution of Cryo-EM Density Maps
In: Research in Computational Molecular Biology, Lecture Notes in Bioinformatics, Vol. 6044, (Ed) B Berger, 14th International Conference on Research in Computational Molecular Biology (RECOMB 2010), Springer, Berlin, Germany, 174-188.
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Habeck M , Rieping W and Nilges M (2004) Estimation of proton configurations from NOESY spectra
24th International Workshop on Bayesian Inference and Maximum Entropy Methods in Science and Engineering, American Institute of Physics, Melville, New York, 119-126.
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michael.habeck
