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Cheng Soon Ong

E-Mail: chengsoon.ong
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Cheng Soon Ong

Position: Research Scientist  Unit: Alumni Schölkopf

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Articles (8):

Schweikert G Person, Zien A Person, Zeller G Person, Behr J Person, Dieterich C Person, Ong CS Person, Philips P Person, De Bona F Person, Hartmann L Person, Bohlen A Person, Krüger N , Sonnenburg S Person and Rätsch G Person (2009) mGene: accurate SVM-based gene finding with an application to nematode genomes Genome Research 19(11) 2133-43.
Schweikert G Person, Behr J Person, Zien A Person, Zeller G Person, Ong CS Person, Sonnenburg S Person and Rätsch G Person (2009) mGene.web: a web service for accurate computational gene finding Nucleic Acids Research 37 W312-6.
Ben-Hur A , Ong CS Person, Sonnenburg S Person, Schölkopf B Person and Rätsch G Person (2008) Support Vector Machines and Kernels for Computational Biology PLoS Computational Biology 4(10: e1000173) 1-10.
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Sonnenburg S Person, Braun ML , Ong CS Person, Bengio S , Bottou L , Holmes G , LeCun Y , Müller K-R Person, Pereira F , Rasmussen CE Person, Rätsch G Person, Schölkopf B Person, Smola A , Vincent P , Weston J Person and Williamson RC (2007) The Need for Open Source Software in Machine Learning Journal of Machine Learning Research 8 2443-2466.
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Schulze U , Hepp B , Ong CS Person and Rätsch G Person (2007) PALMA: mRNA to Genome Alignments using Large Margin Algorithms Bioinformatics 23(15) 1892-1900.
Ong CS Person, Smola A and Williamson R (2005) Learning the Kernel with Hyperkernels Journal of Machine Learning Research 6 1043-1071.
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Borgwardt KM Person, Ong CS Person, Schönauer S , Vishwanathan , Smola AJ Person and Kriegel H-P (2005) Protein function prediction via graph kernels Bioinformatics 21(Suppl. 1: ISMB 2005 Proceedings) i47-i56.
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Ong CS Person (2000) Knowledge Discovery in Databases: An Information Retrieval Perspective Malaysian Journal of Computer Science 13(2) 54-63.
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Conference papers (15):

Dinuzzo F Person, Ong CS Person and Fukumizu K Person (2013) Output Kernel Learning Methods In: International Workshop on Advances in Regularization, Optimization, Kernel Methods and Support Vector Machines: theory and applications, ROKS 2013.
Dinuzzo F Person, Ong CS Person, Gehler PV Person and Pillonetto G (2011) Learning output kernels with block coordinate descent (Ed) Getoor, L. , T. Scheffer, 28th International Conference on Machine Learning (ICML 2011), International Machine Learning Society, Madison, WI, USA, 49-56.
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Ong CS Person and Zien A Person (2008) An Automated Combination of Kernels for Predicting Protein Subcellular Localization In: WABI 2008, (Ed) Crandall, K. A., J. Lagergren, 8th Workshop on Algorithms in Bioinformatics, Springer, Berlin, Germany, 186-197.
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Zien A Person and Ong CS Person (2007) Multiclass Multiple Kernel Learning In: ICML 2007, (Ed) Ghahramani, Z., 24th International Conference on Machine Learning, ACM Press, New York, NY, USA, 1191-1198.
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Zien A Person, Bona FD and Ong CS Person (2007) Training and Approximation of a Primal Multiclass Support Vector Machine In: ASMDA 2007, (Ed) Skiadas, C. H., 12th International Conference on Applied Stochastic Models and Data Analysis, 1-8.
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Rätsch G Person, Hepp B , Schulze U and Ong CS Person (2006) PALMA: Perfect Alignments using Large Margin Algorithms In: GCB 2006, (Ed) Huson, D. , O. Kohlbacher, A. Lupas, K. Nieselt, A. Zell, German Conference on Bioinformatics 2006, Gesellschaft für Informatik, Bonn, Germany, 104-113.
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Canu S , Ong CS Person and Mary X (2005) Splines with non positive kernels In: 5th International ISAAC Congress, (Ed) Begehr, H. G.W., F. Nicolosi, 5th International ISAAC Congress, World Scientific, Singapore, 1-10.
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Ong CS Person, Mary X , Canu S and Smola AJ (2004) Learning with Non-Positive Kernels In: ICML 2004, Twenty-First International Conference on Machine Learning, ACM Press, New York, NY, USA, 81-81.
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Ong CS Person, Smola AJ and Williamson RC (2003) Hyperkernels , 495-502.
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Ong CS Person and Smola AJ (2003) Machine Learning with Hyperkernels , 568-575.
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Wong FWMH , Supian ASM , Ismail AF , Lai WK and Ong CS Person (2001) Enhanced User Authentication through Typing Biometrics with Artificial Neural Networks and K-Nearest Neighbor Algorithm .
Tai SY , Ong CS Person and Abullah NA (2000) On Designing an Automated Malaysian Stemmer for the Malay Language In: Fifth International Workshop on Information Retrieval with Asian Languages, Fifth International Workshop on Information Retrieval with Asian Languages, ACM Press, New York, NY, USA, 207-208.
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Ong CS Person, Wong F and Lai WK (2000) A High Resolution and Accurate Pentium Based Timer .
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Ong CS Person and Lai WK (2000) Enhanced Password Authentication Through Typing Biometrics with K-Means Clustering Algorithm .
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Maisuria K , Ong CS Person and Lai (1999) A Comparison of Artificial Neural Networks and Cluster Analysis for Typing Biometrics Authentication International Joint Conference on Neural Networks, 9999-9999.
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Technical reports (2):

Zien A Person, Raetsch G Person and Ong CS Person: Towards the Inference of Graphs on Ordered Vertexes, 150, Max Planck Institute for Biological Cybernetics, Tübingen, (2006).
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Zien A Person and Ong CS Person: An Automated Combination of Sequence Motif Kernels for Predicting Protein Subcellular Localization, 146, Max Planck Institute for Biological Cybernetics, Tübingen, (2006).
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Theses (1):

Ong CS Person: Kernels: Regularization and Optimization, The Australian National University, Canberra, Australia, (2005). PhD thesis
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Talks (3):

Schweikert G Person, Zeller G , Zien A Person, Behr J , Sonnenburg S Person, Philips P , Ong CS Person and Rätsch G Person (2008): mGene: A Novel Discriminative Gene Finder, Worm Genomics and Systems Biology meeting, Cambridge, USA.
Zien A Person and Ong CS Person (2007): An Automated Combination of Kernels for Predicting Protein Subcellular Localization, NIPS 2007 Workshop on Machine Learning in Computational Biology, Whistler, BC, Canada.
Schweikert G Person, Zeller G , Zien A Person, Ong CS Person, de Bona F , Sonnenburg S Person, Phillips P and Rätsch G Person (2006): Ab-initio gene finding using machine learning, NIPS 2006 Workshop on New Problems and Methods in Computational Biology, Vancouver, BC, Canada.

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